There are two control registers in the 6526, CRA and CRB. CRA is associated with TIMER A and CRB is associated with TIMER B. The register format is as follows:
| Bit | Name | Function | 
|---|---|---|
| 0 | START | 1=START TIMER A, 0=STOP TIMER A. This bit is automatically reset when underflow occurs during one-shot mode. | 
| 1 | PBON | 1=TIMER A output appears on PB6, 0=PB6 normal operation. | 
| 2 | OUTMODE | 1=TOGGLE, 0=PULSE | 
| 3 | RUNMODE | 1=ONE-SHOT, 0=CONTINUOUS | 
| 4 | LOAD | 1=FORCE LOAD (this is a STROBE input, there is no data
storage, bit 4 will always read back a zero and writing a zero has no effect).  | 
| 5 | INMODE | 1=TIMER A counts positive CNT transitions, 0=TIMER A counts   pulses. | 
| 6 | SPMODE | 1=SERIAL PORT output (CNT sources shift clock), 0=SERIAL PORT input (external shift clock required).  | 
| 7 | TODIN | 1=50 Hz clock required on TOD pin for accurate time, 0=60 Hz clock required on TOD pin for accurate time.  | 
| Bit | Name | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0-4 | (Bits CRB0-CRB4 are identical to CRA0-CRA4 for TIMER B with the exception that bit 1 controls the output of TIMER B on PB7). | |||||||||||||||||||||
| 5,6 | INMODE | Bits CRB5 and CRB6 select one of four input modes for TIMER B
as:
  | 
||||||||||||||||||||
| 7 | ALARM | 1=writing to TOD registers sets ALARM, 0=writing to TOD registers sets TOD clock.  | 
| REG | NAME | TOD IN  | 
SP MODE  | 
IN MODE  | 
LOAD | RUN MODE  | 
OUT MODE  | 
PB ON | START | 
|---|---|---|---|---|---|---|---|---|---|
| E | CRA |  0=60Hz 1=50Hz  | 
 0=INPUT 1=OUTPUT  | 
 0=![]() 1=CNT  | 
 1=FORCE LOAD (STROBE)  | 
 0=CONT. 1=O.S.  | 
 0=PULSE 1=TOGGLE  | 
 0=PB6OFF 1=PB6ON  | 
 0=STOP 1=START  | 
| TA | |||||||||
| REG | NAME | ALARM | IN MODE  | 
LOAD | RUN MODE  | 
OUT MODE  | 
PB ON | START | 
|---|---|---|---|---|---|---|---|---|
| F | CRB |  0=TOD 1=ALARM  | 
 00=![]() 01=CNT 10=TA 11=CNT· TA  | 
 1=FORCE LOAD (STROBE)  | 
 0=CONT. 1=O.S.  | 
 0=PULSE 1=TOGGLE  | 
 0=PB7OFF 1=PB7ON  | 
 0=STOP 1=START  | 
| TB | ||||||||
All unused register bits are unaffected by a write and are forced to zero on a read.